SMTL ID : 5e9n.1

Steccherinum murashkinskyi laccase at 0.95 resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.95 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 10 residues within 4Å: Chain A: R.323, G.324, P.329, V.331, E.385, A.387, P.389, G.434, D.435, N.436 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.329 Water bridges: A:V.331 NAG-NAG.2: 6 residues within 4Å: Chain A: V.305, T.307, N.414, T.416, P.417, N.418 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.416 Water bridges: A:N.418

4 x CU: COPPER (II) ION(Non-covalent)

CU.3: 5 residues within 4Å: Chain A: H.112, H.400, H.402, F.450, H.452 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.112, A:H.402, A:H.452, H2O.17 CU.4: 6 residues within 4Å: Chain A: H.65, H.67, W.108, H.110, A.244, H.454 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.67, A:H.110, A:H.454, H2O.17 CU.5: 5 residues within 4Å: Chain A: H.65, H.67, G.68, H.400, H.402 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.65, A:H.400, H2O.12 CU.6: 6 residues within 4Å: Chain A: H.397, P.398, C.453, I.455, H.458, F.463 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.397, A:C.453, A:H.458

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 1 residues within 4Å: Chain A: V.317 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.317, A:V.317

2 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.8: 5 residues within 4Å: Chain A: G.319, Q.320, A.326, D.327, V.383 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.320 PG6.9: 6 residues within 4Å: Chain A: A.335, F.336, A.337, R.340, F.341, S.342 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.335, A:A.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glazunova, O.A. et al., Structure-function study of two new middle-redox potential laccases from basidiomycetes Antrodiella faginea and Steccherinum murashkinskyi. Int. J. Biol. Macromol. (2018)

Release Date

2015-12-23

Peptides

Laccase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Laccase 2