SMTL ID : 5ea1.2 (2 other biounits)

Crystal Structure of SMARCA4 bromodomain in complex with MPD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 9 residues within 4Å: Chain A: V.36, F.37, L.40, Y.49, L.84, A.88, F.91, N.92 Ligands: MPD.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.36, A:F.37, A:L.40 Hydrogen bonds: A:Y.49, A:N.92 Water bridges: A:N.92

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 9 residues within 4Å: Chain A: V.36, F.37, L.40, Y.49, L.84, A.88, F.91, N.92 Ligands: MRD.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.36, A:L.40, A:Y.49, A:A.88 Hydrogen bonds: A:Y.49, A:Y.49, A:N.92 Water bridges: A:N.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lolli, G. et al., High-Throughput Fragment Docking into the BAZ2B Bromodomain: Efficient in Silico Screening for X-Ray Crystallography. Acs Chem.Biol. (2016)

Release Date

2016-03-16

Peptides

Transcription activator BRG1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Transcription activator BRG1

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