SMTL ID : 5ebv.1

Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor 11c and CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

6 x COA: COENZYME A(Non-covalent)

COA.1: 11 residues within 4Å: Chain A: V.107, R.112, R.113, R.114, G.115, L.116, L.117, R.118, I.145, Y.146 Chain C: D.280 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.117, A:I.145 Hydrogen bonds: A:V.107, A:R.112, A:R.113, A:R.114, A:G.115, A:L.116, A:L.117, A:R.118, A:S.141, A:Y.146 Water bridges: A:H.111, A:R.112 COA.4: 11 residues within 4Å: Chain A: D.280 Chain B: V.107, R.112, R.113, R.114, G.115, L.116, L.117, R.118, I.145, Y.146 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.117, B:I.145 Hydrogen bonds: B:V.107, B:R.112, B:R.113, B:R.114, B:G.115, B:L.116, B:L.117, B:R.118, B:S.141, B:Y.146 Water bridges: B:H.111, B:R.112 COA.7: 11 residues within 4Å: Chain B: D.280 Chain C: V.107, R.112, R.113, R.114, G.115, L.116, L.117, R.118, I.145, Y.146 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:L.117, C:I.145 Hydrogen bonds: C:V.107, C:R.112, C:R.113, C:R.114, C:G.115, C:L.116, C:L.117, C:R.118, C:S.141, C:Y.146 Water bridges: C:H.111, C:R.112 COA.10: 11 residues within 4Å: Chain D: V.107, R.112, R.113, R.114, G.115, L.116, L.117, R.118, I.145, Y.146 Chain F: D.280 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:L.117, D:I.145 Hydrogen bonds: D:V.107, D:R.112, D:R.113, D:R.114, D:G.115, D:L.116, D:L.117, D:R.118, D:S.141, D:Y.146, D:Y.146 Water bridges: D:H.111, D:R.112 COA.13: 11 residues within 4Å: Chain D: D.280 Chain E: V.107, R.112, R.113, R.114, G.115, L.116, L.117, R.118, I.145, Y.146 15 PLIP interactions: 15 interactions with chain E Hydrophobic interactions: E:L.117, E:I.145 Hydrogen bonds: E:V.107, E:R.112, E:R.113, E:R.114, E:G.115, E:L.116, E:L.117, E:R.118, E:S.141, E:Y.146, E:Y.146 Water bridges: E:H.111, E:R.112 COA.16: 11 residues within 4Å: Chain E: D.280 Chain F: V.107, R.112, R.113, R.114, G.115, L.116, L.117, R.118, I.145, Y.146 15 PLIP interactions: 15 interactions with chain F Hydrophobic interactions: F:L.117, F:I.145 Hydrogen bonds: F:V.107, F:R.112, F:R.113, F:R.114, F:G.115, F:L.116, F:L.117, F:R.118, F:S.141, F:Y.146, F:Y.146 Water bridges: F:H.111, F:R.112

6 x 5LR: 5-(4-chlorophenyl)-~{N}-[3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)propyl]-4-methyl-1,1-bis(oxidanylidene)-1,2-thiazol-3-amine(Non-covalent)

5LR.2: 16 residues within 4Å: Chain A: F.44, D.46, F.47, I.48, A.53, W.56, R.57, V.60, L.83, M.85, S.103, F.104, V.105, H.139, E.421, F.422 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.44, A:F.44, A:A.53, A:W.56, A:W.56, A:F.104, A:V.105 Hydrogen bonds: A:I.48, A:F.104 Salt bridges: A:D.46, A:E.421 5LR.5: 16 residues within 4Å: Chain B: F.44, D.46, F.47, I.48, A.53, W.56, R.57, V.60, L.83, M.85, S.103, F.104, V.105, H.139, E.421, F.422 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.44, B:F.44, B:A.53, B:W.56, B:W.56, B:F.104, B:V.105 Hydrogen bonds: B:I.48, B:F.104 Salt bridges: B:D.46, B:E.421 5LR.8: 16 residues within 4Å: Chain C: F.44, D.46, F.47, I.48, A.53, W.56, R.57, V.60, L.83, M.85, S.103, F.104, V.105, H.139, E.421, F.422 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:F.44, C:F.44, C:A.53, C:W.56, C:W.56, C:F.104, C:V.105 Hydrogen bonds: C:I.48, C:F.104 Salt bridges: C:D.46, C:E.421 5LR.11: 16 residues within 4Å: Chain D: F.44, D.46, F.47, I.48, A.53, W.56, R.57, V.60, L.83, M.85, S.103, F.104, V.105, H.139, E.421, F.422 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:F.44, D:F.44, D:A.53, D:W.56, D:W.56, D:F.104, D:V.105 Hydrogen bonds: D:I.48, D:F.104 Salt bridges: D:D.46, D:E.421 5LR.14: 16 residues within 4Å: Chain E: F.44, D.46, F.47, I.48, A.53, W.56, R.57, V.60, L.83, M.85, S.103, F.104, V.105, H.139, E.421, F.422 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:F.44, E:F.44, E:A.53, E:W.56, E:W.56, E:F.104, E:V.105 Hydrogen bonds: E:I.48, E:F.104 Salt bridges: E:D.46, E:E.421 5LR.17: 16 residues within 4Å: Chain F: F.44, D.46, F.47, I.48, A.53, W.56, R.57, V.60, L.83, M.85, S.103, F.104, V.105, H.139, E.421, F.422 11 PLIP interactions: 11 interactions with chain F Hydrophobic interactions: F:F.44, F:F.44, F:A.53, F:W.56, F:W.56, F:F.104, F:V.105 Hydrogen bonds: F:I.48, F:F.104 Salt bridges: F:D.46, F:E.421

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: T.289, H.290, Q.417, T.418 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: T.289, H.290, Q.417, T.418 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain C: T.289, H.290, Q.417, T.418 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain D: T.289, H.290, Q.417, T.418 Ligand excluded by PLIP CL.15: 4 residues within 4Å: Chain E: T.289, H.290, Q.417, T.418 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain F: T.289, H.290, Q.417, T.418 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Willby, M.J. et al., Potent Inhibitors of Acetyltransferase Eis Overcome Kanamycin Resistance in Mycobacterium tuberculosis. Acs Chem.Biol. (2016)

Release Date

2016-03-30

Peptides

Enhanced intracellular survival protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Enhanced intracellular survival protein

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