SMTL ID : 5ecd.1

Structure of the Shigella flexneri VapC mutant D98N crystal form 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 8 residues within 4Å: Chain A: T.14, N.15, I.18, E.48, G.101, P.102, F.103, N.104 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.103, A:N.104, A:N.104 Water bridges: A:N.104 Salt bridges: A:E.48, A:E.48 EPE.2: 8 residues within 4Å: Chain B: T.14, N.15, I.18, E.48, G.101, P.102, F.103, N.104 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.103, B:N.104 Water bridges: B:N.104 Salt bridges: B:E.48, B:E.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, K. et al., Structural analysis of the active site architecture of the VapC toxin from Shigella flexneri. Proteins (2016)

Release Date

2016-02-17

Peptides

tRNA(fMet)-specific endonuclease VapC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

tRNA(fMet)-specific endonuclease VapC

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