SMTL ID : 5edk.1

Crystal structure of prothrombin deletion mutant residues 146-167 ( Form II ).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.21 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: N.78, L.88, E.111, N.112, F.113, Q.157, Q.191 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: L.344, N.351 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.344 NAG.3: 3 residues within 4Å: Chain A: N.100, T.102, T.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.102

4 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: E.14, E.19 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain A: E.16, E.26 Ligands: MG.7 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain A: E.25, E.26, E.29 Ligands: MG.7 No protein-ligand interaction detected (PLIP) MG.7: 4 residues within 4Å: Chain A: E.26, E.29 Ligands: MG.5, MG.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pozzi, N. et al., How the Linker Connecting the Two Kringles Influences Activation and Conformational Plasticity of Prothrombin. J.Biol.Chem. (2016)

Release Date

2016-01-20

Peptides

Prothrombin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prothrombin