SMTL ID : 5edl.1

Crystal structure of an S-component of ECF transporter

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x VIB: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM(Non-covalent)

VIB.1: 14 residues within 4Å: Chain A: Y.21, T.25, Y.40, Y.44, W.47, E.68, E.75, V.86, I.89, Q.93, D.129, S.133, Y.135, R.150 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.21, A:Y.40, A:Y.44, A:W.47, A:V.86 Hydrogen bonds: A:T.25, A:Y.44, A:Q.93, A:Q.93, A:D.129, A:R.150 pi-Stacking: A:W.47

2 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)

MPG.2: 9 residues within 4Å: Chain A: P.61, G.62, L.65, L.95, E.98, A.99, L.102, W.106 Ligands: MPG.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.98, A:A.99, A:W.106, A:W.106 MPG.3: 5 residues within 4Å: Chain A: A.124, I.127, Y.128, V.132 Ligands: MPG.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.127, A:I.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Josts, I. et al., Crystal Structure of a Group I Energy Coupling Factor Vitamin Transporter S Component in Complex with Its Cognate Substrate. Cell Chem Biol (2016)

Release Date

2016-08-17

Peptides

Putative HMP/thiamine permease protein YkoE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Putative HMP/thiamine permease protein YkoE