SMTL ID : 5eeg.1

Crystal structure of carminomycin-4-O-methyltransferase DnrK in complex with tetrazole-SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

2 x S8M: (2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-[[(3~{S})-3-azanyl-3-(1~{H}-1,2,3,4-tetrazol-5-yl)propyl]sulfanylmethyl]oxolane-3,4-diol(Non-covalent)

S8M.1: 17 residues within 4Å: Chain A: Y.163, R.173, L.180, F.188, G.207, G.208, G.209, E.230, M.231, G.256, D.257, F.258, F.259, S.272, F.273, N.277, W.278 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.173, A:R.173, A:D.257, A:F.258, A:S.272 Water bridges: A:L.180, A:S.272, A:S.272, A:S.272 pi-Stacking: A:Y.163, A:F.258, A:F.258 S8M.2: 17 residues within 4Å: Chain B: Y.163, R.173, L.180, F.188, G.207, G.208, G.209, E.230, M.231, G.256, D.257, F.258, F.259, S.272, F.273, N.277, W.278 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.180 Hydrogen bonds: B:R.173, B:R.173, B:G.207, B:D.257, B:F.258, B:S.272 Water bridges: B:S.272, B:S.272, B:S.272 pi-Stacking: B:Y.163, B:F.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, T.D. et al., Functional AdoMet Isosteres Resistant to Classical AdoMet Degradation Pathways. Acs Chem.Biol. (2016)

Release Date

2015-12-23

Peptides

Carminomycin 4-O-methyltransferase DnrK: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Carminomycin 4-O-methyltransferase DnrK

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