SMTL ID : 5efc.1

Structure of Influenza B Lee PB2 cap-binding domain bound to GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 10 residues within 4Å: Chain A: Q.7, F.9, R.16, K.23, W.41, E.45, F.47, K.60, F.88, Y.116 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Q.7, A:R.16, A:K.60, A:K.60, A:Y.116, A:Y.116, A:Y.116 Water bridges: A:G.21 Salt bridges: A:K.23, A:E.45 pi-Stacking: A:W.41, A:W.41, A:W.41 pi-Cation interactions: A:W.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, L. et al., Molecular Basis of mRNA Cap Recognition by Influenza B Polymerase PB2 Subunit. J.Biol.Chem. (2016)

Release Date

2015-11-18

Peptides

Polymerase basic protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polymerase basic protein 2

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