SMTL ID : 5eg2.1

SET7/9 N265A in complex with AdoHcy and TAF10 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 14 residues within 4Å: Chain A: I.119, A.122, G.123, E.124, G.160, H.189, K.190, A.191, N.192, H.193, Y.231, W.248, E.252 Chain B: K.4 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.124, A:E.124, A:N.192, A:H.193, A:H.193 Water bridges: A:G.160, A:N.178, A:H.189, A:K.190, A:W.248 Salt bridges: A:K.190 pi-Stacking: A:W.248, A:W.248, A:W.248

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: Y.18, G.22, G.23, S.24, V.43, Y.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.43 Water bridges: A:S.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fick, R.J. et al., Sulfur-Oxygen Chalcogen Bonding Mediates AdoMet Recognition in the Lysine Methyltransferase SET7/9. Acs Chem.Biol. (2016)

Release Date

2016-01-13

Peptides

Histone-lysine N-methyltransferase SETD7: A
Transcription initiation factor TFIID subunit 10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone-lysine N-methyltransferase SETD7

Transcription initiation factor TFIID subunit 10