SMTL ID : 5ejb.1 (1 other biounit)

Crystal structure of prefusion Hendra virus F protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-trimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.389, T.393, G.405, K.406 Chain B: I.93 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain B: E.70, L.71, N.74 No protein-ligand interaction detected (PLIP)

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: S.346, H.347 Chain B: N.316, Q.317, D.318 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:H.347 Hydrogen bonds: B:D.318 SO4.5: 5 residues within 4Å: Chain B: S.346, H.347 Chain C: N.316, Q.317, D.318 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Salt bridges: B:H.347 Hydrogen bonds: C:D.318 SO4.8: 5 residues within 4Å: Chain A: N.316, Q.317, D.318 Chain C: S.346, H.347 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Salt bridges: C:H.347 Hydrogen bonds: A:D.318, A:D.318

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain B: N.389, K.406 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.406 NAG.6: 1 residues within 4Å: Chain C: N.74 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.74 NAG.7: 2 residues within 4Å: Chain C: N.389, T.393 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wong, J.J. et al., Structure and stabilization of the Hendra virus F glycoprotein in its prefusion form. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-01-06

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

Fusion glycoprotein F0

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