SMTL ID : 5ejm.1 (3 other biounits)

ThDP-Mn2+ complex of R413A variant of EcMenD soaked with 2-ketoglutarate for 35 min

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.72 Å
Oligo State
homo-dimer
Ligands
2 x TD5: (4~{R})-4-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-1,3-thiazol-3-ium-2-yl]-4-oxidanyl-butanoic acid(Non-covalent)
2 x MN: MANGANESE (II) ION(Non-covalent)
2 x GOL: GLYCEROL(Non-functional Binders)
2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Qin, M.M. et al., Two active site arginines are critical determinants of substrate binding and catalysis in MenD, a thiamine-dependent enzyme in menaquinone biosynthesis. Biochem. J. (2018)
Release Date
2016-11-02
Peptides
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase: AB
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase

Toggle Identical (AB)

Related Entries With Identical Sequence

5ejm.2 | 5ejm.3 | 5ejm.4