SMTL ID : 5eky.1

Crystal structure of deoxyribose-phosphate aldolase from Escherichia coli (K58E-Y96W mutant)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x BU2: 1,3-BUTANEDIOL(Covalent)

BU2.1: 12 residues within 4Å: Chain A: T.18, L.20, C.47, V.73, D.102, K.167, S.169, T.170, G.171, K.201, A.203, G.204 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.18 Water bridges: A:K.201

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 7 residues within 4Å: Chain A: Y.49, P.50, R.51, F.76, H.78, E.89, W.96 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.51 Water bridges: A:F.76, A:H.78 Salt bridges: A:R.51, A:E.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dick, M. et al., Mechanism-based inhibition of an aldolase at high concentrations of its natural substrate acetaldehyde: structural insights and protective strategies. Chem Sci (2016)

Release Date

2016-05-04

Peptides

Deoxyribose-phosphate aldolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Deoxyribose-phosphate aldolase

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