SMTL ID : 5el2.1

Crystal structure of Odorant Binding Protein 1 from Anopheles gambiae (AgamOBP1) with Icaridin (butan-2-yl 2-(2-hydroxyethyl)piperidine-1-carboxylate)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

4 x KBR: Icaridin(Non-covalent)

KBR.2: 16 residues within 4Å: Chain A: L.73, L.76, H.77, L.80, A.88, M.89, M.91, G.92, K.93, L.96, W.114 Chain B: M.89, K.93, R.94, L.96 Ligands: KBR.4 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.76, A:H.77, A:L.80, A:W.114, B:L.96 KBR.3: 10 residues within 4Å: Chain A: L.58, F.59, A.62, L.76, S.79, L.80, H.111, F.123, L.124, V.125 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.59, A:L.80, A:F.123, A:L.124 Hydrogen bonds: A:V.125, A:V.125 KBR.4: 13 residues within 4Å: Chain A: K.93, L.96 Chain B: E.74, L.76, H.77, L.80, A.88, M.89, G.92, K.93, L.96, W.114 Ligands: KBR.2 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:L.96, B:L.76, B:L.80, B:L.96, B:W.114 KBR.5: 11 residues within 4Å: Chain B: L.19, L.58, F.59, A.62, L.76, S.79, L.80, H.111, F.123, L.124, V.125 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.59, B:L.76, B:L.80, B:F.123 Hydrogen bonds: B:V.125, B:V.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drakou, C.E. et al., The crystal structure of the AgamOBP1Icaridin complex reveals alternative binding modes and stereo-selective repellent recognition. Cell. Mol. Life Sci. (2017)

Release Date

2016-08-31

Peptides

AGAP003309-PA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AGAP003309-PA

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