SMTL ID : 5elq.2 (1 other biounit)

Crystal structure of the SNX27 PDZ domain bound to the C-terminal DGKzeta PDZ binding motif

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x GLU- ASP- GLN- GLU- THR- ALA- VAL: GLU-ASP-GLN-GLU-THR-ALA-VAL(Non-covalent)

GLU-ASP-GLN-GLU-THR-ALA-VAL.1: 17 residues within 4Å: Chain A: G.18, Y.19, G.20, F.21, N.22, V.23, R.24, G.25, Q.26, V.27, S.48, A.49, H.80, V.84, I.87, R.88 Ligands: PG4.4 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.21, A:V.27 Hydrogen bonds: A:Y.19, A:G.20, A:F.21, A:F.21, A:N.22, A:V.23, A:V.23, A:G.25, A:G.25, A:V.27, A:S.48, A:H.80 Water bridges: A:R.24, A:R.24, A:R.24 Salt bridges: A:R.24

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 10 residues within 4Å: Chain A: E.29, G.30, V.73, N.74, V.75, E.76, G.77, A.78, Q.82, L.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.82 PG4.3: 6 residues within 4Å: Chain A: N.71, A.89, G.90, E.93, L.94, I.95 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.71 PG4.4: 3 residues within 4Å: Chain A: N.22, A.49 Ligands: GLU-ASP-GLN-GLU-THR-ALA-VAL.1 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.22, A:N.22, A:N.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clairfeuille, T. et al., A molecular code for endosomal recycling of phosphorylated cargos by the SNX27-retromer complex. Nat.Struct.Mol.Biol. (2016)

Release Date

2016-09-07

Peptides

Sorting nexin-27: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Sorting nexin-27

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