SMTL ID : 5em2.2 (1 other biounit)

Crystal structure of the Erb1-Ytm1 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.67 Å

Oligo State

hetero-oligomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.301, F.302 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.301 EDO.2: 5 residues within 4Å: Chain A: T.299, M.300, R.301, F.302 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.301, A:R.301 EDO.3: 2 residues within 4Å: Chain B: K.185, D.233 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.185, B:K.185 EDO.4: 6 residues within 4Å: Chain B: A.249, D.250, G.251, H.300, T.301, A.302 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.249 EDO.5: 8 residues within 4Å: Chain B: D.414, G.415, T.416, E.446, R.447, W.450, R.458, P.459 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.446, B:R.447

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoms, M. et al., Concerted removal of the Erb1-Ytm1 complex in ribosome biogenesis relies on an elaborate interface. Nucleic Acids Res. (2016)

Release Date

2015-12-23

Peptides

Ribosome biogenesis protein ERB1: A
Ribosome biogenesis protein YTM1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Ribosome biogenesis protein ERB1

Ribosome biogenesis protein YTM1

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