SMTL ID : 5emi.1

N-acetylmuramoyl-L-alanine amidase AmiC2 of Nostoc punctiforme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.13, E.28, H.81, A.82 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.13, A:E.28, A:E.28, A:H.81

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.2: 3 residues within 4Å: Chain A: P.155, A.158, S.159 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.155 Water bridges: A:A.158, A:R.160 MRD.3: 4 residues within 4Å: Chain A: L.52, T.53, D.55, I.68 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.55, A:I.68 Water bridges: A:L.52

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 6 residues within 4Å: Chain A: L.62, H.81, F.130, Y.131, L.142, E.144 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.131, A:E.144 Water bridges: A:V.132 pi-Cation interactions: A:F.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buttner, F.M. et al., Enabling cell-cell communication via nanopore formation: structure, function and localization of the unique cell wall amidase AmiC2 of Nostoc punctiforme. Febs J. (2016)

Release Date

2016-02-10

Peptides

Cell wall hydrolase/autolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell wall hydrolase/autolysin