SMTL ID : 5en2.1

Molecular basis for antibody-mediated neutralization of New World hemorrhagic fever mammarenaviruses

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.1: 13 residues within 4Å: Chain B: S.26, Q.27, N.28 Chain C: A.30, L.33, Q.90, N.92, S.94, T.96, I.98, N.99, L.126, L.128 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.27 Hydrogen bonds: B:Q.27, B:N.28

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain C: V.38, W.48, N.80, T.82 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain B: P.59, D.60, R.61 Ligand excluded by PLIP

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain C: N.19 1 PLIP interactions: 1 interactions with chain C Water bridges: C:N.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahmutovic, S. et al., Molecular Basis for Antibody-Mediated Neutralization of New World Hemorrhagic Fever Mammarenaviruses. Cell Host Microbe (2015)

Release Date

2015-12-30

Peptides

GD01 heavy chain: A
GD01 light chain: B
Pre-glycoprotein polyprotein GP complex: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

GD01 heavy chain

GD01 light chain

Pre-glycoprotein polyprotein GP complex