SMTL ID : 5enz.1

S. aureus MnaA-UDP co-structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-dimer

Ligands

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 17 residues within 4Å: Chain A: R.11, P.12, I.15, H.205, P.236, P.262, L.263, D.264, V.265, F.268, H.269, S.282, G.283, G.284, I.285, E.288 Ligands: TRS.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.11, A:L.263, A:L.263, A:S.282, A:G.283, A:G.284, A:E.288 Water bridges: A:S.282, A:S.282 Salt bridges: A:R.11, A:H.205, A:H.205 pi-Stacking: A:F.268 pi-Cation interactions: A:R.11 UDP.5: 18 residues within 4Å: Chain B: R.11, P.12, I.15, H.205, P.236, P.262, L.263, D.264, V.265, F.268, H.269, S.282, G.283, G.284, I.285, E.288 Ligands: SO4.6, TRS.9 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:R.11, B:L.263, B:L.263, B:S.282, B:G.283, B:G.284, B:E.288, B:R.300 Water bridges: B:H.238, B:S.282, B:S.282 Salt bridges: B:R.11, B:H.205, B:H.205 pi-Stacking: B:F.268 pi-Cation interactions: B:R.11

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: S.188, N.189, I.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.189, A:N.189, A:I.190 SO4.6: 9 residues within 4Å: Chain B: D.96, E.132, R.136, G.283, R.300, E.304, R.305 Ligands: UDP.5, TRS.9 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.283, B:E.304 Salt bridges: B:R.136, B:R.300, B:R.305 SO4.7: 5 residues within 4Å: Chain B: Y.127, S.128, P.129, F.130, R.207 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.130, B:F.130 Water bridges: B:R.207 Salt bridges: B:R.207 SO4.8: 4 residues within 4Å: Chain B: H.205, R.206, R.207, H.238 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.206, B:R.207 Salt bridges: B:H.205, B:R.206, B:R.207

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 8 residues within 4Å: Chain A: P.12, E.13, K.16, H.94, D.96, E.118, E.132 Ligands: UDP.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.16, A:E.118, A:R.305 Water bridges: A:T.10, A:K.16, A:D.96, A:D.96, A:G.284 TRS.9: 12 residues within 4Å: Chain B: T.10, P.12, E.13, K.16, H.94, D.96, T.97, E.118, E.132, R.305 Ligands: UDP.5, SO4.6 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.10, B:K.16, B:E.118, B:E.132, B:R.305 Water bridges: B:H.94, B:G.284, B:G.284

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 7 residues within 4Å: Chain A: Q.137, E.160, G.161, K.162 Chain B: Q.137, E.160, K.162 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:Q.137, B:Q.137, A:R.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mann, P.A. et al., Chemical Genetic Analysis and Functional Characterization of Staphylococcal Wall Teichoic Acid 2-Epimerases Reveals Unconventional Antibiotic Drug Targets. Plos Pathog. (2016)

Release Date

2016-04-27

Peptides

UDP-GlcNAc 2-epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UDP-GlcNAc 2-epimerase