SMTL ID : 5eo9.1

Crystal Structure of the complex of Dpr6 Domain 1 bound to DIP-alpha Domain 1+2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.15, T.17, N.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.15, A:T.17, A:N.105 NAG.2: 2 residues within 4Å: Chain A: N.35 Chain B: H.57 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.35, B:H.57 NAG.5: 2 residues within 4Å: Chain B: N.14, F.101 No protein-ligand interaction detected (PLIP)

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: S.53, H.66, W.73 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.53 Water bridges: A:H.66, A:Q.68 Salt bridges: A:H.66 SO4.4: 2 residues within 4Å: Chain A: Y.25, Q.76 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.25, A:Q.76 Water bridges: A:S.23, A:S.23 SO4.6: 1 residues within 4Å: Chain B: H.31 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.31 Water bridges: B:H.31, B:H.31 Salt bridges: B:H.31 SO4.7: 3 residues within 4Å: Chain B: H.65, D.67, Q.68 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.68 Salt bridges: B:H.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carrillo, R.A. et al., Control of Synaptic Connectivity by a Network of Drosophila IgSF Cell Surface Proteins. Cell (2015)

Release Date

2016-01-06

Peptides

Dpr6, isoform C: A
CG32791, isoform A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dpr6, isoform C

CG32791, isoform A