SMTL ID : 5eok.1

Human Plasma Coagulation Factor XI in complex with peptide P39

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x HIS- ILE- TYR- PRO- ASP- PHE- PRO- THR- ASP: P39(Non-covalent)

HIS-ILE-TYR-PRO-ASP-PHE-PRO-THR-ASP.1: 14 residues within 4Å: Chain A: K.102, N.105, Y.106, N.107, S.108, T.131, A.133, F.137, P.138, H.142, I.145, L.147, L.162 Ligands: NAG-NAG-FUC.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.133, A:I.145, A:L.147, A:L.162 Hydrogen bonds: A:N.105, A:N.105, A:S.139 Salt bridges: A:K.102, A:K.149

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 5 residues within 4Å: Chain A: N.107, S.109, R.120, D.124 Ligands: HIS-ILE-TYR-PRO-ASP-PHE-PRO-THR-ASP.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.120, A:D.124

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.71 No protein-ligand interaction detected (PLIP) NAG.4: 5 residues within 4Å: Chain A: L.430, N.431, S.433, N.511, T.512 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.430 NAG.5: 1 residues within 4Å: Chain A: N.472 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wong, S.S. et al., A novel DFP tripeptide motif interacts with the coagulation factor XI apple 2 domain. Blood (2016)

Release Date

2016-04-06

Peptides

Coagulation factor XI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XI

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