SMTL ID : 5ep8.1

X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis with Sulfate Ion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.81, T.92, K.108, S.110, T.120 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.120 Water bridges: A:T.92, A:T.92 Salt bridges: A:K.81, A:K.108 SO4.2: 5 residues within 4Å: Chain B: T.92, K.108, M.109, S.110, T.120 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.92, B:T.120, B:T.120 Salt bridges: B:K.108

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain B: G.88, T.90, L.243, G.244, A.246, E.255 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.90, B:T.90, B:A.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lashkov, A.A. et al., X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis with Sulfate Ion. To Be Published

Release Date

2016-11-23

Peptides

Pyrimidine-nucleoside phosphorylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pyrimidine-nucleoside phosphorylase