SMTL ID : 5epl.2 (1 other biounit)

Crystal Structure of chromodomain of CBX4 in complex with inhibitor UNC3866

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x 5R0- PHE- ALA- LEU- ELY- 5R5: unc3866(Non-covalent)

5R0-PHE-ALA-LEU-ELY-5R5.1: 15 residues within 4Å: Chain A: H.4, V.5, F.6, A.7, V.8, W.27, R.28, W.30, T.36, E.38, N.42, L.44, D.45, R.47, L.48 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:D.45, A:R.47, A:L.48, A:L.48, A:F.6, A:F.6, A:W.27, A:W.27, A:W.30, A:W.30 Hydrogen bonds: A:V.8, A:E.38, A:N.42, A:H.4 Water bridges: A:R.28 pi-Cation interactions: A:F.6

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: R.17, K.18 No protein-ligand interaction detected (PLIP) UNX.3: 1 residues within 4Å: Chain A: R.47 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: E.40, E.41, I.43 No protein-ligand interaction detected (PLIP) UNX.5: 2 residues within 4Å: Chain A: F.6, W.30 No protein-ligand interaction detected (PLIP) UNX.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stuckey, J.I. et al., A cellular chemical probe targeting the chromodomains of Polycomb repressive complex 1. Nat.Chem.Biol. (2016)

Release Date

2015-12-23

Peptides

E3 SUMO-protein ligase CBX4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 SUMO-protein ligase CBX4

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