SMTL ID : 5ero.4 (3 other biounits)

Crystal structure of elongation domain of Phomopsis amygdali fusicoccadiene synthase complexed with cobalt ions and pamidronate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

8 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: D.235, D.236, D.254 Ligands: 210.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.235 CO.2: 5 residues within 4Å: Chain A: D.104, D.108, E.257 Ligands: CO.3, 210.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.104, A:D.108 CO.3: 6 residues within 4Å: Chain A: D.104, D.108, Q.166, E.257 Ligands: CO.2, 210.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.104, A:D.108, H2O.1, H2O.1 CO.5: 2 residues within 4Å: Chain A: D.73, D.77 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.77 CO.6: 4 residues within 4Å: Chain B: D.235, D.236, D.254 Ligands: 210.9 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.235 CO.7: 5 residues within 4Å: Chain B: D.104, D.108, E.257 Ligands: CO.8, 210.9 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.104, B:D.108 CO.8: 6 residues within 4Å: Chain B: D.104, D.108, Q.166, E.257 Ligands: CO.7, 210.9 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.104, B:D.108, H2O.1, H2O.1 CO.10: 2 residues within 4Å: Chain B: D.73, D.77 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.77

2 x 210: PAMIDRONATE(Non-covalent)

210.4: 13 residues within 4Å: Chain A: D.104, D.105, D.108, R.113, K.191, Q.232, D.235, D.236, K.249, K.259 Ligands: CO.1, CO.2, CO.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.113, A:R.113, A:T.192, A:Q.232, A:D.235, A:K.249, A:K.249 210.9: 13 residues within 4Å: Chain B: D.104, D.105, D.108, R.113, K.191, Q.232, D.235, D.236, K.249, K.259 Ligands: CO.6, CO.7, CO.8 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.113, B:R.113, B:T.192, B:Q.232, B:D.235, B:K.249, B:K.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, M. et al., Structure and Function of Fusicoccadiene Synthase, a Hexameric Bifunctional Diterpene Synthase. Acs Chem.Biol. (2016)

Release Date

2016-01-20

Peptides

Fusicoccadiene synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Fusicoccadiene synthase

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