SMTL ID : 5es8.2 (1 other biounit)

Crystal structure of the initiation module of LgrA in the thiolation state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x 5S4: [(3~{R})-4-[[3-[2-[[(2~{S})-2-azanyl-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate(Covalent)

5S4.1: 21 residues within 4Å: Chain A: Y.390, S.391, F.395, D.396, G.397, L.400, K.420, Y.421, Y.439, P.441, G.462, G.463, G.482, I.488, M.489, R.591, G.592, Y.593, S.729, I.730, M.733 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.400, A:I.488, A:Y.593, A:I.730 Hydrogen bonds: A:Y.390, A:S.391, A:D.396, A:K.420, A:Y.421, A:K.589, A:K.589, A:R.591, A:G.592 Salt bridges: A:R.591

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reimer, J.M. et al., Synthetic cycle of the initiation module of a formylating nonribosomal peptide synthetase. Nature (2016)

Release Date

2016-01-20

Peptides

Linear gramicidin synthetase subunit A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Linear gramicidin synthetase subunit A

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