SMTL ID : 5etx.3 (3 other biounits)

Crystal structure of HCV NS3/4A protease A156T variant in complex with 5172-Linear (MK-5172 linear analogue)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.111, T.112, C.113, C.159, A.161, H.163 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.111, A:C.159, A:H.163

1 x 5RS: ~{tert}-butyl ~{N}-[(2~{S})-1-[(2~{S},4~{R})-2-[[(1~{R},2~{R})-1-(cyclopropylsulfonylcarbamoyl)-2-ethyl-cyclopropyl]carbamoyl]-4-(3-ethyl-7-methoxy-quinoxalin-2-yl)oxy-pyrrolidin-1-yl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate(Non-covalent)

5RS.2: 20 residues within 4Å: Chain A: Q.55, T.56, F.57, Y.70, H.71, G.72, V.92, D.95, I.146, L.149, K.150, G.151, S.152, S.153, F.168, R.169, T.170, A.171, V.172, S.173 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Q.55, A:F.57, A:Y.70, A:H.71, A:V.92, A:D.95, A:I.146, A:I.146, A:K.150, A:F.168, A:A.171, A:V.172 Hydrogen bonds: A:H.71, A:H.71, A:G.151, A:S.152, A:S.153, A:S.153, A:R.169, A:A.171, A:A.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soumana, D.I. et al., Structural and Thermodynamic Effects of Macrocyclization in HCV NS3/4A Inhibitor MK-5172. Acs Chem.Biol. (2016)

Release Date

2016-01-13

Peptides

NS3 protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

NS3 protease

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