SMTL ID : 5eum.1

1.8 Angstrom Crystal Structure of ATP-binding Component of Fused Lipid Transporter Subunits of ABC superfamily from Haemophilus influenzae.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 1 residues within 4Å: Chain A: H.238 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.238 ACT.2: 3 residues within 4Å: Chain A: A.44, G.45, D.205 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.44 Water bridges: A:G.45 ACT.13: 2 residues within 4Å: Chain B: H.238, L.242 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.238 ACT.14: 5 residues within 4Å: Chain B: A.110, N.111, Y.121, R.123, I.126 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.123

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 10 residues within 4Å: Chain A: R.53, S.54, G.55, S.56, G.57, K.58, S.59 Chain B: N.106, G.151, E.152 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.55, A:S.56, A:S.56, A:G.57, A:K.58, A:S.59, A:S.59, B:N.106, B:E.152 Salt bridges: A:K.58 SO4.4: 3 residues within 4Å: Chain A: K.30, E.31, E.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.31, A:E.32 SO4.5: 4 residues within 4Å: Chain A: L.157, S.158, G.159, R.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.159 Salt bridges: A:R.162 SO4.6: 1 residues within 4Å: Chain A: K.21 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.21 SO4.7: 3 residues within 4Å: Chain A: S.122, R.123, E.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.123, A:E.124 SO4.15: 10 residues within 4Å: Chain A: N.106, G.151, E.152 Chain B: R.53, S.54, G.55, S.56, G.57, K.58, S.59 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.55, B:S.56, B:S.56, B:G.57, B:K.58, B:S.59, A:N.106, A:E.152 Salt bridges: B:K.58 SO4.16: 3 residues within 4Å: Chain B: K.30, E.31, E.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.31, B:E.32

7 x MLI: MALONATE ION(Non-functional Binders)

MLI.8: 3 residues within 4Å: Chain A: F.138, Q.161, R.164 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.161 Water bridges: A:Q.161 Salt bridges: A:K.141, A:R.164 MLI.9: 4 residues within 4Å: Chain A: Q.196, R.214, L.215, S.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.196, A:L.215, A:S.216 MLI.10: 3 residues within 4Å: Chain A: K.10, R.87, S.89 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.89 Water bridges: A:K.10 Salt bridges: A:K.10, A:R.87 MLI.17: 2 residues within 4Å: Chain B: F.138, R.164 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.161 Water bridges: B:F.138 Salt bridges: B:K.141, B:R.164 MLI.18: 5 residues within 4Å: Chain B: E.192, Q.196, R.214, L.215, S.216 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.192, B:Q.196, B:L.215, B:S.216 MLI.19: 3 residues within 4Å: Chain B: K.10, R.87, S.89 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.89 Water bridges: B:K.10, B:K.10 Salt bridges: B:K.10, B:R.87 MLI.20: 4 residues within 4Å: Chain B: A.26, E.31, L.33, Q.73 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.26, B:L.33 Hydrogen bonds: B:E.31

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.11: 2 residues within 4Å: Chain A: I.232, R.235 7 PLIP interactions: 7 interactions with chain A Water bridges: A:I.232, A:R.235, A:R.235, A:R.235, A:R.235 Salt bridges: A:R.235, A:R.235 SIN.21: 2 residues within 4Å: Chain B: I.232, R.235 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.235 Water bridges: B:I.232, B:R.233, B:R.235 Salt bridges: B:R.235, B:R.235

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 2 residues within 4Å: Chain B: S.122, R.123 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.8 Angstrom Crystal Structure of ATP-binding Component of Fused Lipid Transporter Subunits of ABC superfamily from Haemophilus influenzae. To Be Published

Release Date

2015-12-02

Peptides

Lipid A export ATP-binding/permease protein MsbA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lipid A export ATP-binding/permease protein MsbA