SMTL ID : 5euz.1

Rat prestin STAS domain in complex with iodide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 6 residues within 4Å: Chain A: P.39, I.40, Y.41, M.77, D.78, G.81 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: V.89, K.90, L.123 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: Q.35, Q.73 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: T.72, S.130, I.131 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: Q.9, Y.16, I.28, H.132, V.135, L.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.9 EDO.6: 5 residues within 4Å: Chain A: Y.4, V.6, E.27, K.32, F.34 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.4, A:K.32 EDO.7: 5 residues within 4Å: Chain A: V.109, T.113, F.118, K.124, L.127 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain A: S.105, A.106, Q.107 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.106, A:Q.107 EDO.9: 4 residues within 4Å: Chain A: N.75, S.105, Q.107 Ligands: EDO.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.107

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.10: 11 residues within 4Å: Chain A: G.93, G.96, I.97, Y.98, V.99, A.122, L.123, E.125, L.126, E.142, A.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.98

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.11: 4 residues within 4Å: Chain A: D.12, T.13, D.14, V.15 No protein-ligand interaction detected (PLIP) PEG.12: 2 residues within 4Å: Chain A: E.119, N.120 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lolli, G. et al., The STAS domain of mammalian SLC26A5 prestin harbours an anion-binding site. Biochem.J. (2016)

Release Date

2015-12-16

Peptides

Prestin,Prestin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prestin,Prestin

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