SMTL ID : 5exp.1

AAA+ domain of FleQ from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: E.41, S.42, G.43, T.44, G.45, K.46, E.47, R.229 Ligands: EDO.4 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.43, A:T.44, A:T.44, A:G.45, A:K.46, A:E.47 Water bridges: A:K.46, A:V.48, A:R.229 Salt bridges: A:K.46, A:R.229 SO4.2: 3 residues within 4Å: Chain E: E.41, S.42, H.153 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:S.42 Water bridges: E:S.42, E:S.42, A:E.167 Salt bridges: E:H.153 SO4.7: 9 residues within 4Å: Chain B: E.41, S.42, G.43, T.44, G.45, K.46, E.47, R.229 Ligands: EDO.10 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.43, B:T.44, B:T.44, B:G.45, B:K.46, B:E.47 Water bridges: B:K.46, B:V.48, B:R.229 Salt bridges: B:K.46, B:R.229 SO4.8: 3 residues within 4Å: Chain F: E.41, S.42, H.153 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:S.42 Water bridges: F:S.42, F:S.42, B:E.167 Salt bridges: F:H.153 SO4.13: 9 residues within 4Å: Chain C: E.41, S.42, G.43, T.44, G.45, K.46, E.47, R.229 Ligands: EDO.16 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.43, C:T.44, C:T.44, C:G.45, C:K.46, C:E.47 Water bridges: C:K.46, C:V.48, C:R.229 Salt bridges: C:K.46, C:R.229 SO4.14: 3 residues within 4Å: Chain D: E.41, S.42, H.153 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:S.42 Water bridges: D:S.42, D:S.42, C:E.167 Salt bridges: D:H.153 SO4.19: 9 residues within 4Å: Chain D: E.41, S.42, G.43, T.44, G.45, K.46, E.47, R.229 Ligands: EDO.22 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:G.43, D:T.44, D:T.44, D:G.45, D:K.46, D:E.47 Water bridges: D:K.46, D:V.48, D:R.229 Salt bridges: D:K.46, D:R.229 SO4.20: 3 residues within 4Å: Chain B: E.41, S.42, H.153 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:S.42 Water bridges: B:S.42, B:S.42, D:E.167 Salt bridges: B:H.153 SO4.25: 9 residues within 4Å: Chain E: E.41, S.42, G.43, T.44, G.45, K.46, E.47, R.229 Ligands: EDO.28 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:G.43, E:T.44, E:T.44, E:G.45, E:K.46, E:E.47 Water bridges: E:K.46, E:V.48, E:R.229 Salt bridges: E:K.46, E:R.229 SO4.26: 3 residues within 4Å: Chain C: E.41, S.42, H.153 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:S.42 Water bridges: C:S.42, C:S.42, E:E.167 Salt bridges: C:H.153 SO4.31: 9 residues within 4Å: Chain F: E.41, S.42, G.43, T.44, G.45, K.46, E.47, R.229 Ligands: EDO.34 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:G.43, F:T.44, F:T.44, F:G.45, F:K.46, F:E.47 Water bridges: F:K.46, F:V.48, F:R.229 Salt bridges: F:K.46, F:R.229 SO4.32: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain F Water bridges: F:E.167, F:E.167

24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: M.26, Q.27, N.52, L.53, H.56 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain A: G.43, G.45, V.48, V.228, R.229 Ligands: SO4.1 Ligand excluded by PLIP EDO.5: 2 residues within 4Å: Chain A: Q.142, N.143 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: Q.27, Q.28, V.29, A.30, D.31, T.32 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain B: M.26, Q.27, N.52, L.53, H.56 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain B: G.43, G.45, V.48, V.228, R.229 Ligands: SO4.7 Ligand excluded by PLIP EDO.11: 2 residues within 4Å: Chain B: Q.142, N.143 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain B: Q.27, Q.28, V.29, A.30, D.31, T.32 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain C: M.26, Q.27, N.52, L.53, H.56 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain C: G.43, G.45, V.48, V.228, R.229 Ligands: SO4.13 Ligand excluded by PLIP EDO.17: 2 residues within 4Å: Chain C: Q.142, N.143 Ligand excluded by PLIP EDO.18: 6 residues within 4Å: Chain C: Q.27, Q.28, V.29, A.30, D.31, T.32 Ligand excluded by PLIP EDO.21: 5 residues within 4Å: Chain D: M.26, Q.27, N.52, L.53, H.56 Ligand excluded by PLIP EDO.22: 6 residues within 4Å: Chain D: G.43, G.45, V.48, V.228, R.229 Ligands: SO4.19 Ligand excluded by PLIP EDO.23: 2 residues within 4Å: Chain D: Q.142, N.143 Ligand excluded by PLIP EDO.24: 6 residues within 4Å: Chain D: Q.27, Q.28, V.29, A.30, D.31, T.32 Ligand excluded by PLIP EDO.27: 5 residues within 4Å: Chain E: M.26, Q.27, N.52, L.53, H.56 Ligand excluded by PLIP EDO.28: 6 residues within 4Å: Chain E: G.43, G.45, V.48, V.228, R.229 Ligands: SO4.25 Ligand excluded by PLIP EDO.29: 2 residues within 4Å: Chain E: Q.142, N.143 Ligand excluded by PLIP EDO.30: 6 residues within 4Å: Chain E: Q.27, Q.28, V.29, A.30, D.31, T.32 Ligand excluded by PLIP EDO.33: 5 residues within 4Å: Chain F: M.26, Q.27, N.52, L.53, H.56 Ligand excluded by PLIP EDO.34: 6 residues within 4Å: Chain F: G.43, G.45, V.48, V.228, R.229 Ligands: SO4.31 Ligand excluded by PLIP EDO.35: 5 residues within 4Å: Chain A: R.184, D.223, P.225 Chain F: Q.142, N.143 Ligand excluded by PLIP EDO.36: 6 residues within 4Å: Chain F: Q.27, Q.28, V.29, A.30, D.31, T.32 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsuyama, B.Y. et al., Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-01-13

Peptides

Transcriptional regulator FleQ: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Transcriptional regulator FleQ

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