SMTL ID : 5exq.2 (1 other biounit)

Human cytochrome c Y48H

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 31 residues within 4Å: Chain A: K.13, C.14, Q.16, C.17, H.18, T.28, G.29, P.30, L.32, L.35, R.38, T.40, G.41, Q.42, A.43, Y.46, H.48, T.49, N.52, W.59, L.64, Y.67, L.68, T.78, K.79, M.80, I.81, F.82, I.85, L.94, L.98 26 PLIP interactions: 26 interactions with chain A, Hydrophobic interactions: A:Q.16, A:L.32, A:L.35, A:Y.46, A:L.64, A:L.68, A:M.80, A:F.82, A:I.85, A:L.98 Hydrogen bonds: A:G.41, A:Q.42, A:A.43, A:T.49, A:N.52, A:N.52, A:T.78, A:T.78, A:K.79 Water bridges: A:R.38 Salt bridges: A:R.38, A:H.48, A:H.48 pi-Stacking: A:Y.67 pi-Cation interactions: A:H.18 Metal complexes: A:H.18

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: K.25 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fellner, M. et al., Altered structure and dynamics of pathogenic cytochrome c variants correlate with increased apoptotic activity. Biochem.J. (2021)

Release Date

2016-11-30

Peptides

Cytochrome c: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytochrome c

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