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SMTL ID : 5ey0.1
Crystal structure of CodY from Staphylococcus aureus with GTP and Ile
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.60 Å
Oligo State
homo-dimer
Ligands
2 x
ILE
:
ISOLEUCINE
(Non-covalent)
ILE.1:
10 residues within 4Å:
Chain A:
R.78
,
M.82
,
I.88
,
P.89
,
Y.92
,
T.113
,
V.114
,
F.115
,
P.116
,
P.117
7
PLIP interactions
:
6 interactions with chain A
,
1 Ligand-Ligand interactions
Hydrophobic interactions:
A:I.88
,
A:Y.92
Hydrogen bonds:
A:T.113
Water bridges:
A:R.78
,
A:R.78
,
I.1
Salt bridges:
A:R.78
ILE.3:
9 residues within 4Å:
Chain B:
R.78
,
M.82
,
P.89
,
Y.92
,
T.113
,
V.114
,
F.115
,
P.116
,
P.117
6
PLIP interactions
:
5 interactions with chain B
,
1 Ligand-Ligand interactions
Hydrophobic interactions:
B:Y.92
Hydrogen bonds:
B:T.113
Water bridges:
B:R.78
,
B:R.78
,
I.3
Salt bridges:
B:R.78
2 x
GTP
:
GUANOSINE-5'-TRIPHOSPHATE
(Non-covalent)
GTP.2:
15 residues within 4Å:
Chain A:
A.38
,
V.39
,
D.40
,
F.41
,
S.60
,
R.61
,
R.62
,
K.64
,
L.66
,
E.170
,
I.171
,
R.173
,
E.174
,
K.175
,
E.178
24
PLIP interactions
:
24 interactions with chain A
Hydrogen bonds:
A:V.39
,
A:F.41
,
A:S.60
,
A:R.61
,
A:R.62
,
A:E.170
,
A:R.173
,
A:K.175
,
A:E.178
Water bridges:
A:R.61
,
A:R.61
,
A:K.64
,
A:K.175
,
A:K.175
Salt bridges:
A:R.61
,
A:R.62
,
A:R.62
,
A:K.64
,
A:K.64
,
A:E.170
,
A:E.174
,
A:K.175
pi-Stacking:
A:F.41
pi-Cation interactions:
A:F.41
GTP.4:
14 residues within 4Å:
Chain B:
A.38
,
V.39
,
D.40
,
F.41
,
S.60
,
R.61
,
R.62
,
K.64
,
L.66
,
E.170
,
I.171
,
R.173
,
E.174
,
K.175
29
PLIP interactions
:
29 interactions with chain B
Hydrogen bonds:
B:V.39
,
B:V.39
,
B:V.39
,
B:F.41
,
B:S.60
,
B:R.61
,
B:R.62
,
B:R.173
,
B:K.175
,
B:K.175
Water bridges:
B:K.42
,
B:R.61
,
B:R.62
,
B:R.62
,
B:R.62
,
B:K.64
,
B:E.174
,
B:E.174
,
B:K.175
Salt bridges:
B:R.62
,
B:R.62
,
B:K.64
,
B:K.64
,
B:E.170
,
B:E.174
,
B:K.175
,
B:K.175
pi-Stacking:
B:F.41
pi-Cation interactions:
B:F.41
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Han, A.R. et al., The structure of the pleiotropic transcription regulator CodY provides insight into its GTP-sensing mechanism. Nucleic Acids Res. (2016)
Release Date
2016-09-14
Peptides
GTP-sensing transcriptional pleiotropic repressor CodY:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
B
A
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GTP-sensing transcriptional pleiotropic repressor CodY
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