SMTL ID : 5ey5.1

LBCATS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

hetero-2-2-mer

Ligands

2 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)

G3P.1: 13 residues within 4Å: Chain A: E.49, I.64, L.100, Y.175, T.183, G.184, R.186, F.212, G.213, I.231, V.232, G.233, S.234 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:E.49, A:Y.175, A:G.184, A:R.186, A:F.212, A:G.213, A:G.233, A:S.234 Water bridges: A:I.214, A:I.214, A:A.235 G3P.4: 11 residues within 4Å: Chain C: F.22, E.49, I.64, L.100, Y.175, T.183, F.212, G.213, I.231, G.233, S.234 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:E.49, C:Y.175, C:T.183, C:F.212, C:G.213, C:G.233, C:S.234 Water bridges: C:A.235

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)(Non-covalent)

PLP.2: 19 residues within 4Å: Chain B: A.80, H.81, K.82, Q.109, S.185, C.225, V.226, G.227, G.228, G.229, S.230, N.231, G.298, L.299, A.343, E.345, S.346, S.371, G.372 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.343 Hydrogen bonds: B:G.227, B:G.228, B:G.229, B:S.230, B:S.230, B:N.231, B:N.231, B:S.371 Water bridges: B:A.232 Salt bridges: B:H.81, B:K.82 pi-Stacking: B:H.81 PLP.5: 15 residues within 4Å: Chain D: H.81, K.82, Q.109, S.185, C.225, G.227, G.228, G.229, S.230, N.231, G.298, A.343, E.345, S.371, G.372 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:A.343 Hydrogen bonds: D:H.81, D:S.185, D:G.227, D:G.228, D:G.229, D:S.230, D:N.231, D:N.231, D:S.371 Water bridges: D:A.232 Salt bridges: D:H.81, D:K.82 pi-Stacking: D:H.81

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain B: G.227, T.265, Y.301, P.302, G.303 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.227 Water bridges: B:T.265 NA.6: 4 residues within 4Å: Chain B: G.48, P.50 Chain D: G.48, P.50 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.48 NA.7: 5 residues within 4Å: Chain D: G.227, A.263, T.265, Y.301, G.303 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Merkl, R. et al., LBCATS. To Be Published

Release Date

2016-04-27

Peptides

LBCATS-a: AC
LBCA-b: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

LBCATS-a

LBCA-b