SMTL ID : 5ey9.1 (1 other biounit)

Structure of FadD32 from Mycobacterium marinum complexed to AMPC12

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x 5SV: [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl icosyl hydrogen phosphate(Non-covalent)

5SV.1: 20 residues within 4Å: Chain A: H.230, D.231, M.232, T.236, S.278, A.279, L.310, S.313, E.314, P.315, S.341, Y.342, G.343, L.344, A.345, L.349, D.468, I.479, R.482, K.600 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.279, A:L.349, A:L.349 Hydrogen bonds: A:S.313, A:S.341, A:G.343, A:A.345, A:D.468, A:K.600 Water bridges: A:V.316, A:V.316, A:R.482 Salt bridges: A:H.230, A:K.600 pi-Stacking: A:Y.342

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: V.396, D.397, E.398, W.399 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.397 Water bridges: A:H.453, A:H.453 GOL.3: 3 residues within 4Å: Chain A: D.413, F.473, K.474 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.413, A:K.474 GOL.4: 6 residues within 4Å: Chain A: R.268, T.273, G.274, S.304, N.305, K.307 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.268, A:R.268 Water bridges: A:R.334 GOL.5: 5 residues within 4Å: Chain A: V.156, I.157, A.158, A.161, V.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.156, A:A.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guillet, V. et al., Insight into Structure-Function Relationships and Inhibition of the Fatty Acyl-AMP Ligase (FadD32) Orthologs from Mycobacteria. J.Biol.Chem. (2016)

Release Date

2015-12-16

Peptides

Long-chain-fatty-acid--AMP ligase FadD32: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Long-chain-fatty-acid--AMP ligase FadD32

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