- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.72 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 8 x NA: SODIUM ION(Non-functional Binders)
NA.2: 4 residues within 4Å:- Chain A: K.481, G.484, I.485
- Chain B: V.270
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.481
NA.3: 5 residues within 4Å:- Chain A: I.49, I.50, D.118, I.205, T.206
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:I.50, A:D.118
- Water bridges: A:I.50
NA.7: 4 residues within 4Å:- Chain A: V.270
- Chain B: K.481, G.484, I.485
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.484
NA.8: 5 residues within 4Å:- Chain B: I.49, I.50, D.118, I.205, T.206
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.50, B:D.118
NA.13: 4 residues within 4Å:- Chain C: K.481, G.484, I.485
- Chain D: V.270
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:V.270
- Water bridges: D:N.272
NA.14: 5 residues within 4Å:- Chain C: I.49, I.50, D.118, I.205, T.206
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:I.50, C:I.50, C:D.118
NA.18: 4 residues within 4Å:- Chain C: V.270
- Chain D: K.481, G.484, I.485
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:V.270
NA.19: 5 residues within 4Å:- Chain D: I.49, I.50, D.118, I.205, T.206
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:I.205
- Water bridges: D:I.50
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.4: 5 residues within 4Å:- Chain A: W.38, R.212, E.215, E.218, E.219
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.212, A:E.219
- Water bridges: A:R.212, A:E.219
- Salt bridges: A:E.215, A:E.218
EPE.9: 7 residues within 4Å:- Chain B: S.29, R.31, W.38, R.212, E.215, E.218, E.219
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:R.212, B:E.215, B:E.219
- Water bridges: B:R.31, B:R.212
- Salt bridges: B:E.215, B:E.215, B:E.218, B:E.218
EPE.10: 5 residues within 4Å:- Chain A: E.124, A.345, T.347
- Chain B: N.513, W.514
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Water bridges: B:N.513, B:N.513, A:T.347
- pi-Cation interactions: B:W.514
EPE.15: 7 residues within 4Å:- Chain C: V.512, N.513, W.514
- Chain D: A.345, D.346, T.347, E.348
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- pi-Cation interactions: C:W.514
- Hydrogen bonds: D:D.346
- 4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.5: 3 residues within 4Å:- Chain A: F.304, H.469, Y.471
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.132, A:Y.179
PGE.11: 3 residues within 4Å:- Chain B: Y.179, H.469, Y.471
No protein-ligand interaction detected (PLIP)PGE.16: 5 residues within 4Å:- Chain C: A.128, Y.179, F.304, H.469, Y.471
3 PLIP interactions:3 interactions with chain C- Water bridges: C:D.129, C:D.132, C:D.132
PGE.20: 3 residues within 4Å:- Chain D: Y.179, F.304, Y.471
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Y.471
- Water bridges: D:Y.179
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Halavaty, A.S. et al., 1.72 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) P449M point mutant from Staphylococcus aureus in complex with NAD+ and BME-modified Cys289. To Be Published
- Release Date
- 2015-12-09
- Peptides
- Betaine aldehyde dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.72 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 8 x NA: SODIUM ION(Non-functional Binders)
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Halavaty, A.S. et al., 1.72 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) P449M point mutant from Staphylococcus aureus in complex with NAD+ and BME-modified Cys289. To Be Published
- Release Date
- 2015-12-09
- Peptides
- Betaine aldehyde dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D