SMTL ID : 5ez5.2 (1 other biounit)

Crystal structure of active Rab11A (S20V) in complex with GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.18, T.36, D.59 Ligands: GTP.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.18, A:T.36, H2O.1 MG.3: 4 residues within 4Å: Chain B: S.18, T.36, D.59 Ligands: GTP.4 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.18, B:T.36, H2O.1

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 25 residues within 4Å: Chain A: D.12, V.13, G.14, V.15, G.16, K.17, S.18, N.19, F.29, N.30, L.31, S.33, S.35, T.36, T.60, A.61, G.62, N.117, K.118, D.120, L.121, S.147, A.148, L.149 Ligands: MG.1 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.14, A:V.15, A:G.16, A:K.17, A:S.18, A:N.19, A:N.30, A:S.33, A:S.35, A:T.36, A:T.60, A:G.62, A:N.117, A:K.118, A:K.118, A:A.148, A:L.149 Water bridges: A:S.18 Salt bridges: A:K.17, A:K.17, A:D.120 pi-Stacking: A:F.29 GTP.4: 24 residues within 4Å: Chain B: D.12, V.13, G.14, V.15, G.16, K.17, S.18, N.19, F.29, N.30, L.31, S.33, S.35, T.36, T.60, A.61, G.62, N.117, K.118, D.120, S.147, A.148, L.149 Ligands: MG.3 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:G.14, B:V.15, B:G.16, B:K.17, B:S.18, B:N.19, B:N.30, B:S.33, B:T.36, B:T.60, B:G.62, B:N.117, B:K.118, B:K.118, B:A.148, B:L.149 Water bridges: B:S.18, B:S.18 Salt bridges: B:K.17, B:K.17, B:D.120 pi-Stacking: B:F.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, Y.-C. et al., Crystal structure of active Rab11A (S20V) in complex with GTP. To Be Published

Release Date

2016-12-07

Peptides

Ras-related protein Rab-11A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras-related protein Rab-11A

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