SMTL ID : 5ezv.1 (1 other biounit)

X-ray crystal structure of AMP-activated protein kinase alpha-2/alpha-1 RIM chimaera (alpha-2(1-347)/alpha-1(349-401)/alpha-2(397-end) beta-1 gamma-1) co-crystallized with C2 (5-(5-hydroxyl-isoxazol-3-yl)-furan-2-phosphonic acid)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x STU: STAUROSPORINE(Non-covalent)

STU.1: 19 residues within 4Å: Chain A: L.36, G.37, V.38, G.39, V.44, A.57, K.59, I.91, M.107, E.108, Y.109, V.110, G.113, E.114, E.157, N.158, L.160, A.170, D.171 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.36, A:A.57, A:K.59, A:L.160, A:A.170 Hydrogen bonds: A:E.108, A:V.110, A:E.157

1 x C1V: 3-[4-(2-hydroxyphenyl)phenyl]-4-oxidanyl-6-oxidanylidene-7H-thieno[2,3-b]pyridine-5-carbonitrile(Non-covalent)

C1V.2: 14 residues within 4Å: Chain A: V.25, L.32, G.33, K.43, K.45, I.60, N.62, D.102 Chain B: V.81, R.83, T.106, S.108, N.111, V.113 10 PLIP interactions: 3 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:T.106, B:V.113, A:V.25, A:V.25, A:L.32, A:I.60 pi-Cation interactions: B:R.83, A:K.45 Hydrogen bonds: A:K.45, A:D.102

2 x C2Z: 5-(5-hydroxyl-isoxazol-3-yl)-furan-2-phosphonic acid(Non-covalent)

C2Z.3: 9 residues within 4Å: Chain C: R.75, H.156, R.157, S.231, H.303, R.304, S.319, S.321 Ligands: C2Z.4 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:H.156 Hydrogen bonds: C:S.231, C:S.231, C:S.231, C:R.304, C:S.319, C:S.321 Salt bridges: C:R.75, C:R.157, C:H.303 pi-Cation interactions: C:H.303, C:R.304 C2Z.4: 10 residues within 4Å: Chain C: R.75, T.92, T.94, H.156, S.231, S.247, K.248, F.249, R.304 Ligands: C2Z.3 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:F.249 Hydrogen bonds: C:T.92, C:T.94, C:T.94, C:H.156, C:H.156, C:S.247, C:K.248, C:K.248, C:F.249, C:R.304 Salt bridges: C:R.75, C:H.303, C:R.304

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langendorf, C.G. et al., Structural basis of allosteric and synergistic activation of AMPK by furan-2-phosphonic derivative C2 binding. Nat Commun (2016)

Release Date

2016-03-09

Peptides

5'-AMP-activated protein kinase catalytic subunit alpha-2/alpha-1 RIM SWAP chimera: A
5'-AMP-activated protein kinase subunit beta-1: B
5'-AMP-activated protein kinase subunit gamma-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

5'-AMP-activated protein kinase catalytic subunit alpha-2/alpha-1 RIM SWAP chimera

5'-AMP-activated protein kinase subunit beta-1

5'-AMP-activated protein kinase subunit gamma-1

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