SMTL ID : 5f05.1 (1 other biounit)

Crystal structure of glutathione transferase F5 from Populus trichocarpa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 17 residues within 4Å: Chain A: S.11, T.12, N.13, R.16, L.35, H.40, K.41, N.49, G.52, Q.53, V.54, P.55, E.66, S.67, R.68 Chain B: H.104, Q.105 20 PLIP interactions: 2 interactions with chain B, 18 interactions with chain A Hydrogen bonds: B:Q.105, A:N.13, A:R.16, A:H.40, A:Q.53, A:V.54, A:V.54, A:S.67, A:S.67, A:R.68 Water bridges: B:H.104, A:K.41, A:K.41, A:V.54, A:E.66, A:R.68, A:R.68 Hydrophobic interactions: A:N.13, A:Q.53 Salt bridges: A:K.41 GSH.5: 16 residues within 4Å: Chain A: H.104, Q.105 Chain B: S.11, T.12, N.13, R.16, L.35, H.40, K.41, G.52, Q.53, V.54, P.55, E.66, S.67, R.68 20 PLIP interactions: 18 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:N.13, B:Q.53 Hydrogen bonds: B:N.13, B:R.16, B:H.40, B:Q.53, B:V.54, B:V.54, B:S.67, B:S.67, A:Q.105 Water bridges: B:K.41, B:K.41, B:E.66, B:R.68, B:R.68, B:R.68, A:H.104 Salt bridges: B:K.41, B:R.68

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: L.176, K.181, F.184, D.185, S.191, V.194, A.195, T.198 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.181, A:F.184, A:D.185, A:S.191 Water bridges: A:T.198 GOL.7: 7 residues within 4Å: Chain B: L.176, K.181, F.184, D.185, S.191, V.194, A.195 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.181, B:D.185, B:D.185, B:S.191

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: S.151, H.189 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.189, H2O.2, H2O.6, H2O.7 MG.8: 2 residues within 4Å: Chain B: S.151, H.189 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.189, H2O.10, H2O.15

1 x 12P: DODECAETHYLENE GLYCOL(Non-covalent)

12P.4: 28 residues within 4Å: Chain A: Q.72, A.75, H.76, A.79, Q.84, L.85, G.86, A.87, A.88, Y.92, I.95, L.96, Q.99, L.163 Chain B: Q.72, A.75, H.76, A.79, Q.84, L.85, G.86, A.87, A.88, Y.92, I.95, L.96, Q.99, L.163 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.99, B:A.87 Water bridges: A:L.85, A:G.86, A:G.86, B:G.86

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.6: 8 residues within 4Å: Chain A: N.90 Chain B: D.59, G.60, D.61, L.62, Y.73, Q.77, Y.78 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.61, B:Q.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pegeot, H. et al., Structural plasticity among glutathione transferase Phi members: natural combination of catalytic residues confers dual biochemical activities. FEBS J. (2017)

Release Date

2016-12-07

Peptides

Phi class glutathione transferase GSTF5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phi class glutathione transferase GSTF5

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