SMTL ID : 5f0v.1

X-ray crystal structure of a thiolase from Escherichia coli at 1.8 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

44 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: L.181, S.185, K.188, E.320, F.326, V.340, N.341, G.345 Ligand excluded by PLIP EDO.2: 5 residues within 4Å: Chain A: I.173, T.174, R.175, T.243 Ligands: EDO.5 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: Q.186, A.190, K.223, A.224, N.225, S.226 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: D.51, G.107, Q.108, A.109, Q.110 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: T.174, R.175, E.176 Ligands: EDO.2 Ligand excluded by PLIP EDO.6: 7 residues within 4Å: Chain A: N.20, G.21, S.22, A.24, S.25, V.207, F.214 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: R.175, L.234, R.235, P.236 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: A.282, S.283, K.301 Chain B: D.51, Q.108 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: E.180, L.181, H.184 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: S.133, R.136 Chain C: R.132, S.133, R.136 Ligands: EDO.39 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: D.30, A.33, K.37, K.74 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: Q.70, L.73 Chain B: T.155 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain A: E.170, Y.171 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: K.37, S.47, S.75, G.76, L.77 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: Y.143, D.144, L.147, R.148 Chain D: D.139 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain A: P.236, F.238, D.239, K.240 Ligand excluded by PLIP EDO.17: 9 residues within 4Å: Chain B: L.181, S.185, K.188, E.320, F.326, V.340, N.341, G.344, G.345 Ligand excluded by PLIP EDO.18: 9 residues within 4Å: Chain B: K.188, A.191, A.192, S.195, A.197, V.342, N.343, R.371 Ligands: EDO.19 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain B: R.187, K.188, A.191 Ligands: EDO.18 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain A: D.51, E.52 Chain B: A.282, S.283 Ligand excluded by PLIP EDO.21: 2 residues within 4Å: Chain B: L.234, A.246 Ligand excluded by PLIP EDO.22: 4 residues within 4Å: Chain B: A.168, I.173, T.174, T.243 Ligand excluded by PLIP EDO.23: 6 residues within 4Å: Chain B: K.37, I.40, S.47, S.75, G.76, L.77 Ligand excluded by PLIP EDO.24: 5 residues within 4Å: Chain B: D.139 Chain C: Y.143, L.147, R.148, M.152 Ligand excluded by PLIP EDO.25: 7 residues within 4Å: Chain B: N.20, G.21, S.22, A.24, S.25, V.207, T.209 Ligand excluded by PLIP EDO.26: 2 residues within 4Å: Chain A: L.122 Chain B: S.133 Ligand excluded by PLIP EDO.27: 5 residues within 4Å: Chain B: L.147, L.151, H.159, I.252 Chain C: L.137 Ligand excluded by PLIP EDO.28: 3 residues within 4Å: Chain B: Q.300, K.301, Q.304 Ligand excluded by PLIP EDO.29: 6 residues within 4Å: Chain B: Q.186, R.187, K.223, A.224, N.225, S.226 Ligand excluded by PLIP EDO.30: 4 residues within 4Å: Chain B: Y.143, R.148, M.152 Chain C: D.139 Ligand excluded by PLIP EDO.31: 8 residues within 4Å: Chain C: L.181, S.185, K.188, E.320, F.326, V.340, N.341, G.345 Ligand excluded by PLIP EDO.32: 2 residues within 4Å: Chain C: K.240, A.241 Ligand excluded by PLIP EDO.33: 3 residues within 4Å: Chain C: A.282, S.283 Chain D: D.51 Ligand excluded by PLIP EDO.34: 6 residues within 4Å: Chain C: N.20, G.21, S.22, A.24, S.25, F.214 Ligand excluded by PLIP EDO.35: 3 residues within 4Å: Chain C: P.287, A.289, L.290 Ligand excluded by PLIP EDO.36: 4 residues within 4Å: Chain B: Q.141 Chain C: D.139, G.140, Q.141 Ligand excluded by PLIP EDO.37: 7 residues within 4Å: Chain D: N.20, G.21, S.22, A.24, S.25, V.207, F.214 Ligand excluded by PLIP EDO.38: 8 residues within 4Å: Chain D: L.181, H.184, S.185, K.188, E.320, F.326, V.340, N.341 Ligand excluded by PLIP EDO.39: 6 residues within 4Å: Chain C: R.132, S.133 Chain D: F.19, N.20, S.121 Ligands: EDO.10 Ligand excluded by PLIP EDO.40: 4 residues within 4Å: Chain C: D.51, Q.108 Chain D: A.282, S.283 Ligand excluded by PLIP EDO.41: 6 residues within 4Å: Chain C: A.1, S.2, M.3, A.106 Chain D: M.3, Q.105 Ligand excluded by PLIP EDO.42: 6 residues within 4Å: Chain A: N.20 Chain B: R.132, S.133, R.136 Chain D: S.133, R.136 Ligand excluded by PLIP EDO.43: 6 residues within 4Å: Chain D: L.126, L.127, D.128, A.129, Y.143, R.148 Ligand excluded by PLIP EDO.44: 1 residues within 4Å: Chain D: G.307 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ithayaraja, M. et al., Crystal structure of a thiolase from Escherichia coli at 1.8 angstrom resolution. Acta Crystallogr.,Sect.F (2016)

Release Date

2016-07-13

Peptides

Acetyl-CoA acetyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Acetyl-CoA acetyltransferase

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