SMTL ID : 5f12.1

WrbA in complex with FMN under crystallization conditions of WrbA-FMN-BQ structure (4YQE)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: S.9, M.10, Y.11, G.12, H.13, I.14, P.76, T.77, R.78, F.79, G.80, S.112, T.113, G.114, T.115, G.116, G.117 Chain B: D.91, H.132 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.79 Hydrogen bonds: A:Y.11, A:G.12, A:H.13, A:I.14, A:T.77, A:T.77, A:F.79, A:G.80, A:S.112, A:S.112, A:G.114, A:T.115, A:G.116, A:G.117, A:G.117 Salt bridges: A:H.13 FMN.2: 20 residues within 4Å: Chain A: D.91, H.132 Chain B: S.9, M.10, Y.11, G.12, H.13, I.14, P.76, T.77, R.78, F.79, G.80, S.112, T.113, G.114, T.115, G.116, G.117, A.165 18 PLIP interactions: 1 interactions with chain C, 16 interactions with chain B, 1 interactions with chain A Water bridges: C:Y.142, B:T.113, A:H.132 Hydrogen bonds: B:Y.11, B:H.13, B:I.14, B:T.77, B:T.77, B:F.79, B:G.80, B:S.112, B:T.113, B:G.114, B:G.116, B:G.117, B:G.117 Salt bridges: B:H.13 pi-Stacking: B:F.79 FMN.3: 19 residues within 4Å: Chain C: S.9, M.10, Y.11, G.12, H.13, I.14, P.76, T.77, R.78, F.79, G.80, S.112, T.113, G.114, T.115, G.116, G.117 Chain D: D.91, H.132 20 PLIP interactions: 18 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:F.79 Hydrogen bonds: C:Y.11, C:G.12, C:H.13, C:I.14, C:T.77, C:T.77, C:F.79, C:G.80, C:S.112, C:S.112, C:T.113, C:G.114, C:T.115, C:G.116, C:G.117, C:G.117 Salt bridges: C:H.13 Water bridges: D:H.132, D:H.132 FMN.4: 20 residues within 4Å: Chain C: D.91, H.132 Chain D: S.9, M.10, Y.11, G.12, H.13, I.14, P.76, T.77, R.78, F.79, G.80, S.112, T.113, G.114, T.115, G.116, G.117, A.165 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:Y.11, D:H.13, D:I.14, D:T.77, D:T.77, D:F.79, D:G.80, D:S.112, D:T.113, D:T.113, D:G.114, D:G.116, D:G.117, D:G.117 Salt bridges: D:H.13 pi-Stacking: D:F.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Degtjarik, O. et al., Quantum Calculations Indicate Effective Electron Transfer between FMN and Benzoquinone in a New Crystal Structure of Escherichia coli WrbA. J.Phys.Chem.B (2016)

Release Date

2016-05-25

Peptides

NAD(P)H dehydrogenase (quinone): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

NAD(P)H dehydrogenase (quinone)

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