SMTL ID : 5f21.1

human CD38 in complex with nanobody MU375

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: W.80, S.81, R.82, S.175, T.176, F.177 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.82, A:T.176, A:T.176, A:F.177 Water bridges: A:R.82, A:T.176, A:T.176 Salt bridges: A:R.82 SO4.2: 4 residues within 4Å: Chain A: R.235, P.236, D.237, K.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.237, A:K.238 Salt bridges: A:R.235

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: C.54, D.55, I.56, T.57, N.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, T. et al., Immuno-targeting the multifunctional CD38 using nanobody. Sci Rep (2016)

Release Date

2016-06-15

Peptides

ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1: A
nanobody MU375: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1

nanobody MU375

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