- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-dimer
- Ligands
- 13 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 2 x 5VH: ~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-6-[[carbamimidoyl(methyl)amino]methyl]-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide(Non-covalent)
5VH.7: 19 residues within 4Å:- Chain A: V.134, S.135, T.136, E.232, I.233, S.237, F.238, N.239, F.244, I.283, N.284, M.285, W.286, E.288, V.289, G.290, G.332, D.333, M.334
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:V.134, A:T.136, A:F.244, A:I.283, A:W.286
- Hydrogen bonds: A:N.284, A:G.290, A:G.332
- Halogen bonds: A:S.237
5VH.15: 18 residues within 4Å:- Chain B: V.134, S.135, T.136, E.232, I.233, S.237, F.238, N.239, N.284, M.285, W.286, E.288, V.289, G.290, G.331, G.332, D.333, M.334
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:V.134, B:W.286, B:D.333
- Hydrogen bonds: B:N.284, B:G.290, B:G.290, B:G.332
- Halogen bonds: B:S.237
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Melillo, B. et al., Small-Molecule CD4-Mimics: Structure-Based Optimization of HIV-1 Entry Inhibition. ACS Med Chem Lett (2016)
- Release Date
- 2016-03-30
- Peptides
- ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-dimer
- Ligands
- 13 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 2 x 5VH: ~{N}'-[(1~{R},2~{R})-2-(carbamimidamidomethyl)-6-[[carbamimidoyl(methyl)amino]methyl]-2,3-dihydro-1~{H}-inden-1-yl]-~{N}-(4-chloranyl-3-fluoranyl-phenyl)ethanediamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Melillo, B. et al., Small-Molecule CD4-Mimics: Structure-Based Optimization of HIV-1 Entry Inhibition. ACS Med Chem Lett (2016)
- Release Date
- 2016-03-30
- Peptides
- ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B