SMTL ID : 5f6c.1

The structure of E. coli RNase E catalytically inactive mutant with RNA bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x G- U: RNA (5'-R(P*GP*U)-3')(Non-covalent)

G-U.1: 17 residues within 4Å: Chain B: S.123, A.125, V.130, M.132, A.138, G.139, G.140, I.141, S.142, R.143, R.144, I.169, V.170, R.171, T.172, A.173, Q.392 Protein-ligand interaction information (PLIP) not available

1 x G- U- G: RNA (5'-R(P*GP*UP*G)-3')(Non-covalent)

G-U-G.2: 18 residues within 4Å: Chain A: S.123, A.125, V.130, M.132, A.138, G.139, G.140, I.141, S.142, R.143, R.150, I.169, V.170, R.171, T.172, A.173, R.375, Q.392 Protein-ligand interaction information (PLIP) not available

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain A: D.28, L.29, D.30, R.337, D.340, R.373 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.28, A:L.29, A:D.30, A:R.337, A:D.340 MG.5: 4 residues within 4Å: Chain B: D.30, R.218, R.373, S.395 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.30, B:S.395

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 6 residues within 4Å: Chain A: C.406, R.408, C.409 Chain B: C.406, R.408, C.409 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.406, B:C.409, A:C.406, A:C.409

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bandyra, K.J. et al., Substrate Recognition and Autoinhibition in the Central Ribonuclease RNase E. Mol. Cell (2018)

Release Date

2016-12-14

Peptides

Ribonuclease E: A
Ribonuclease E: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribonuclease E

Ribonuclease E