SMTL ID : 5f6r.1

Co-crystal Structure of 3-hydroxydecanoyl-(acyl carrier protein) Dehydratase from Yersinia pestis with 5-Benzoylpentanoic Acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

homo-dimer

Ligands

2 x 5VO: 6-oxidanylidene-6-phenyl-hexanoic acid(Non-covalent)

5VO.1: 11 residues within 4Å: Chain A: H.74, M.81, P.82, G.83, F.117, T.118, G.119, Q.120 Chain B: R.108, A.109, L.110 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.117, A:F.117, B:L.110 Hydrogen bonds: A:G.83, B:A.109 Water bridges: A:C.84 Salt bridges: A:H.74 5VO.3: 13 residues within 4Å: Chain A: R.108, A.109, L.110 Chain B: H.74, V.80, M.81, P.82, G.83, F.117, T.118, G.119, Q.120, Y.159 12 PLIP interactions: 7 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:F.117, B:F.117, B:Y.159, A:R.108, A:R.108, A:A.109, A:L.110 Hydrogen bonds: B:M.81, B:G.83, A:A.109 Water bridges: B:C.84 Salt bridges: B:H.74

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain A: T.12, E.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.12 Water bridges: A:T.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Co-crystal Structure of 3-hydroxydecanoyl-(acyl carrier protein) Dehydratase from Yersinia pestis with 5-Benzoylpentanoic Acid. To Be Published

Release Date

2015-12-23

Peptides

3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase

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