SMTL ID : 5f6z.1

Sandercyanin Fluorescent Protein purified from Sander vitreus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-tetramer

Ligands

4 x BLA: BILIVERDINE IX ALPHA(Non-covalent)

BLA.1: 21 residues within 4Å: Chain A: S.1, F.36, Q.37, A.42, T.43, A.44, Y.46, N.58, R.59, E.60, K.68, V.70, H.89, A.92, V.95, Y.97, S.112, Y.123 Chain D: L.116, G.117, A.118 22 PLIP interactions: 18 interactions with chain A, 4 interactions with chain D Hydrophobic interactions: A:F.36, A:Q.37, A:A.42, A:A.44, A:N.58, A:E.60, A:E.60, A:V.70, A:H.89, A:A.92, A:V.95, A:V.95, A:Y.123, D:A.118 Hydrogen bonds: A:N.58, A:E.60, A:Y.123 pi-Stacking: A:F.36, A:H.89 Water bridges: D:A.118, D:A.118, D:S.119 BLA.3: 21 residues within 4Å: Chain B: S.1, D.28, F.36, T.43, A.44, N.58, R.59, E.60, K.68, S.69, V.70, H.89, A.92, V.95, Y.97, S.112, I.114, Y.123 Chain C: L.116, G.117, A.118 21 PLIP interactions: 19 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:D.28, B:F.36, B:A.44, B:N.58, B:E.60, B:H.89, B:A.92, B:V.95, B:V.95, B:I.114, B:Y.123, C:A.118 Hydrogen bonds: B:F.36, B:N.58, B:E.60, C:A.118 Water bridges: B:S.1, B:S.1, B:Y.46 pi-Stacking: B:F.36, B:H.89 BLA.5: 23 residues within 4Å: Chain B: L.116, G.117, A.118 Chain C: S.1, D.28, F.36, A.42, T.43, A.44, N.58, R.59, E.60, K.68, S.69, V.70, H.89, V.95, P.96, Y.97, S.112, I.114, Y.123, S.125 20 PLIP interactions: 19 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:F.36, C:F.36, C:F.36, C:A.42, C:A.44, C:N.58, C:E.60, C:V.70, C:V.70, C:H.89, C:V.95, C:V.95, C:I.114, C:Y.123, B:A.118 Hydrogen bonds: C:N.58, C:E.60, C:E.60 pi-Stacking: C:F.36, C:H.89 BLA.7: 21 residues within 4Å: Chain A: L.116, G.117, A.118 Chain D: S.1, D.28, F.36, K.38, A.42, T.43, A.44, N.58, R.59, E.60, K.68, V.70, H.89, A.92, V.95, Y.97, S.112, Y.123 20 PLIP interactions: 18 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:D.28, D:F.36, D:F.36, D:A.42, D:A.44, D:N.58, D:E.60, D:V.70, D:V.70, D:H.89, D:A.92, D:V.95, D:V.95, D:Y.123, A:A.118 Hydrogen bonds: D:N.58, D:E.60 pi-Stacking: D:F.36, D:H.89 Water bridges: A:A.118

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: L.62, N.64, T.66 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.66, A:T.66 NAG.4: 3 residues within 4Å: Chain B: L.62, N.64, T.66 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.64, B:T.66, B:T.66 NAG.6: 2 residues within 4Å: Chain C: N.64, T.66 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.64, C:T.66 NAG.8: 2 residues within 4Å: Chain D: N.64, T.66 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:T.66, D:T.66 Water bridges: D:N.64, D:N.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, S. et al., Blue protein with red fluorescence. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-09-28

Peptides

Sandercyanin Fluorescent Protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Sandercyanin Fluorescent Protein