SMTL ID : 5f87.4 (5 other biounits)

Crystal structure of Drosophila Poglut1 (Rumi) complexed with UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 15 residues within 4Å: Chain A: P.179, I.188, R.217, G.218, S.219, T.221, R.225, E.263, V.264, F.266, G.280, S.284, F.285, R.286 Ligands: GOL.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:E.263 Hydrogen bonds: A:S.219, A:V.264, A:V.264, A:S.284, A:R.286 Salt bridges: A:R.225, A:R.225, A:R.286, A:R.286

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: R.113, D.139, W.172, P.179, A.283, S.284, F.285 Ligands: UDP.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.139, A:S.284, A:F.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, H. et al., Structural analysis of Notch-regulating Rumi reveals basis for pathogenic mutations. Nat. Chem. Biol. (2016)

Release Date

2016-07-20

Peptides

O-glucosyltransferase rumi: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

O-glucosyltransferase rumi

Related Entries With Identical Sequence