SMTL ID : 5fae.1

N184K pathological variant of gelsolin domain 2 (trigonal form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: G.39, D.40, E.62 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.39, A:D.40, A:E.62, H2O.1, H2O.3

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.21, N.59, R.60, Y.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.60 Salt bridges: A:R.21 SO4.3: 2 residues within 4Å: Chain A: Q.17, K.19 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.17 SO4.4: 3 residues within 4Å: Chain A: R.25, A.26, K.65 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.26 Water bridges: A:K.65 Salt bridges: A:K.65 SO4.5: 2 residues within 4Å: Chain A: R.21, N.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.59 Water bridges: A:N.59 Salt bridges: A:R.21

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 7 residues within 4Å: Chain A: W.33, F.36, N.38, W.53, E.92, K.103, P.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.38, A:E.92

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 1 residues within 4Å: Chain A: H.85 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boni, F. et al., Molecular basis of a novel renal amyloidosis due to N184K gelsolin variant. Sci Rep (2016)

Release Date

2016-10-05

Peptides

Gelsolin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gelsolin

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