SMTL ID : 5faq.1

OXA-48 in complex with FPI-1465

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

3 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.1: 2 residues within 4Å: Chain A: E.101 Ligands: CD.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.101, A:E.101 CD.3: 1 residues within 4Å: Chain A: D.119 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.119, A:D.119, H2O.6, H2O.8 CD.4: 1 residues within 4Å: Ligands: CD.1 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.182 Chain B: R.182 Ligand excluded by PLIP

2 x 5VW: [[(3~{R},6~{S})-1-methanoyl-6-[[(3~{S})-pyrrolidin-3-yl]oxycarbamoyl]piperidin-3-yl]amino] hydrogen sulfate(Covalent)

5VW.5: 13 residues within 4Å: Chain A: A.45, S.46, K.49, D.77, I.78, W.81, S.94, V.96, K.184, T.185, G.186, Y.187, R.226 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.78, A:Y.187 Hydrogen bonds: A:S.46, A:S.94, A:S.94, A:T.185, A:T.185, A:Y.187 Water bridges: A:K.184, A:R.190, A:R.190, A:R.226 Salt bridges: A:K.184, A:R.226 5VW.12: 13 residues within 4Å: Chain B: A.45, S.46, K.49, D.77, I.78, W.81, S.94, V.96, K.184, T.185, G.186, Y.187, R.226 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:I.78, B:Y.187 Hydrogen bonds: B:S.46, B:S.94, B:S.94, B:T.185, B:G.186, B:Y.187 Water bridges: B:S.94, B:R.226 Salt bridges: B:K.184, B:R.226

6 x CO: COBALT (II) ION(Non-functional Binders)(Non-covalent)

CO.6: 1 residues within 4Å: Ligands: CO.9 No protein-ligand interaction detected (PLIP) CO.7: 3 residues within 4Å: Chain B: H.10, E.13, E.232 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.10, B:E.13, B:E.232 CO.8: 2 residues within 4Å: Chain B: E.123 Ligands: CO.11 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.123, B:E.123 CO.9: 2 residues within 4Å: Chain B: H.116 Ligands: CO.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.116 CO.10: 2 residues within 4Å: Chain A: H.154 Chain B: H.66 No protein-ligand interaction detected (PLIP) CO.11: 3 residues within 4Å: Chain B: H.116, E.123 Ligands: CO.8 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.123, B:E.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, A.M. et al., Structural and Kinetic Characterization of Diazabicyclooctanes as Dual Inhibitors of Both Serine-beta-Lactamases and Penicillin-Binding Proteins. Acs Chem.Biol. (2016)

Release Date

2016-01-20

Peptides

Beta-lactamase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-lactamase