SMTL ID : 5fas.1

OXA-48 in complex with FPI-1523

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-dimer

Ligands

2 x 5VR: [[(3~{R},6~{S})-6-(acetamidocarbamoyl)-1-methanoyl-piperidin-3-yl]amino] hydrogen sulfate(Covalent)

5VR.1: 13 residues within 4Å: Chain A: A.46, S.47, I.79, W.82, S.95, V.97, K.185, T.186, G.187, Y.188, T.190, R.191, R.227 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.79, A:Y.188 Hydrogen bonds: A:S.47, A:S.95, A:T.186, A:T.186, A:Y.188, A:Y.188, A:R.191 Water bridges: A:K.185 Salt bridges: A:K.185, A:R.227 5VR.11: 13 residues within 4Å: Chain B: A.46, S.47, I.79, W.82, S.95, V.97, K.185, T.186, G.187, Y.188, T.190, R.191, R.227 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:I.79, B:Y.188 Hydrogen bonds: B:S.47, B:S.95, B:T.186, B:G.187, B:Y.188, B:Y.188, B:T.190, B:R.191 Water bridges: B:S.95, B:T.190, B:T.190 Salt bridges: B:K.185, B:R.227

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.183 Chain B: R.183 Ligand excluded by PLIP

2 x CD: CADMIUM ION(Non-covalent)

CD.3: 1 residues within 4Å: Chain A: D.120 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.120, A:D.120, H2O.2, H2O.8 CD.4: 4 residues within 4Å: Chain A: E.14, H.15, E.233 Ligands: CO.7 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.14, A:H.15, A:E.233, A:E.233, H2O.7

7 x CO: COBALT (II) ION(Non-covalent)(Non-functional Binders)

CO.5: 3 residues within 4Å: Chain A: H.117, E.124 Ligands: CO.6 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.124, A:E.124, H2O.2 CO.6: 3 residues within 4Å: Chain A: H.117, E.124 Ligands: CO.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.117, A:E.124, A:E.124, H2O.2 CO.7: 4 residues within 4Å: Chain A: H.11, E.14, E.233 Ligands: CD.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.11, A:E.14, A:E.233, H2O.7, H2O.9 CO.8: 2 residues within 4Å: Chain B: H.117 Ligands: CO.9 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.117, H2O.16 CO.9: 1 residues within 4Å: Ligands: CO.8 No protein-ligand interaction detected (PLIP) CO.10: 3 residues within 4Å: Chain B: H.11, E.14, E.233 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.11, B:E.14, B:E.14, B:E.233 CO.12: 2 residues within 4Å: Chain A: H.155 Chain B: H.67 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, A.M. et al., Structural and Kinetic Characterization of Diazabicyclooctanes as Dual Inhibitors of Both Serine-beta-Lactamases and Penicillin-Binding Proteins. Acs Chem.Biol. (2016)

Release Date

2016-01-20

Peptides

Beta-lactamase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-lactamase

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