SMTL ID : 5fbu.1

Crystal structure of rifampin phosphotransferase RPH-Lm from Listeria monocytogenes in complex with rifampin-phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x 5WP: Rifampin-phosphate(Non-covalent)

5WP.1: 19 residues within 4Å: Chain A: I.331, V.333, Q.336, Q.337, Y.351, T.354, T.355, P.356, V.368, L.387, S.390, L.478, F.479, M.488, M.491, R.666, K.670, M.673, H.825 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.331, A:V.333, A:T.354, A:V.368, A:L.387, A:L.478, A:F.479 Hydrogen bonds: A:Q.336, A:Q.337, A:Y.351, A:Y.351, A:Y.351 Water bridges: A:R.666, A:M.823 Salt bridges: A:R.666, A:K.670, A:H.825

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: K.551, N.552 Ligand excluded by PLIP

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 3 residues within 4Å: Chain A: T.361, Y.707, E.709 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.361, A:Y.707

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J. et al., Rifampin phosphotransferase is an unusual antibiotic resistance kinase. Nat Commun (2016)

Release Date

2015-12-30

Peptides

Phosphoenolpyruvate synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoenolpyruvate synthase

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