SMTL ID : 5fc4.1

Mcl-1 complexed with small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x 5WL: 6-chloranyl-~{N}-methylsulfonyl-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indole-2-carboxamide(Non-covalent)

5WL.1: 14 residues within 4Å: Chain A: A.57, F.58, M.61, V.79, M.80, V.83, G.92, R.93, T.96, L.97, F.100, G.101 Ligands: 5WL.2, 5WK.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.79, A:V.83, A:V.83, A:T.96, A:L.97, A:F.100, A:F.100 Hydrogen bonds: A:R.93 pi-Stacking: A:F.58, A:F.100, A:F.100 Halogen bonds: A:A.57 5WL.2: 10 residues within 4Å: Chain A: M.61, K.64, L.65, R.78, V.79, H.82, V.83, D.86, R.93 Ligands: 5WL.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.65 Hydrogen bonds: A:H.82 Halogen bonds: A:M.61

1 x 5WK: 2-[5-[1,1,2,2-tetrakis(fluoranyl)ethyl]-1~{H}-pyrazol-3-yl]phenol(Non-covalent)

5WK.3: 9 residues within 4Å: Chain A: R.45, V.46, G.92, V.95, T.96, F.148, F.149, H.150 Ligands: 5WL.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.149 Water bridges: A:R.45, A:V.46, A:V.46 pi-Stacking: A:F.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pelz, N.F. et al., Discovery of 2-Indole-acylsulfonamide Myeloid Cell Leukemia 1 (Mcl-1) Inhibitors Using Fragment-Based Methods. J.Med.Chem. (2016)

Release Date

2016-03-02

Peptides

Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Induced myeloid leukemia cell differentiation protein Mcl-1