SMTL ID : 5fcc.1

Structure of HutD from Pseudomonas fluorescens SBW25 (NaCl condition)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: A.52, I.54, F.60, R.68, I.70, D.115, N.117 Ligands: CL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.68, A:D.115, A:N.117 EDO.2: 6 residues within 4Å: Chain A: D.37, G.39, T.40, R.124, Y.125, Q.191 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.37, A:G.39, A:G.46, A:R.124, A:Y.125 EDO.6: 8 residues within 4Å: Chain B: A.52, I.54, F.60, R.68, I.70, D.115, N.117 Ligands: CL.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.68, B:N.117

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.68, N.117, I.119 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: S.61, R.68 Ligands: EDO.1 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: F.60, S.61, R.68 Ligands: EDO.6 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: R.68, N.117, I.119 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 2 residues within 4Å: Chain A: E.43, Y.66 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.43, A:Y.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerth, M.L. et al., Structure of HutD from Pseudomonas fluorescens. To Be Published

Release Date

2017-01-25

Peptides

HutD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HutD

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